Å@ MAFF303099-specific upregulated genes in bacteroid MAFF303099 & R7A-shared upregulated genes in bacteroid
EI-1 mll5803 unknown protein mlr5805 cytochrome c peroxidase
mll5804 hypothetical protein mlr5807 transcriptional regulator
msr5806 unknown protein mll5809 succinic semialdehyde dehydrogenase
mll5813 transposase mll5810 chaperonin groEL
mll5814 N-hydroxyarylamine O-acetyltransferase msl5812 chaperonin groES
mll5815 coproporphyrinogen III dehydrogenase mll5837 NIFA, NIF-SPECIFIC REGULATORY PROTEIN
mll5816 unknown protein mll5840 C4-dicarboxylate transport protein
mll8748 unknown protein msl5852 hypothetical protein(fixU protein)
msr5817 unknown protein mll5854 hypothetical protein(nifZ protein)
mlr5819 hypothetical protein msl8750 ferredoxin 2[4Fe-4S], fdxN 
mll5838 hypothetical protein mll5855 nitrogen fixation protein nifB
mll5839 unknown protein mll5857 nif-specific regulatory protein,nifA
mll5844 unknown protein msl5859 FERREDOXIN LIKE PROTEIN, fixX
mlr5845 hypothetical protein mll5860 nitrogen fixation protein,fixC
mll5853 hypothetical protein mll5861 nitrogen fixation protein,fixB
msr8678 unknown protein mll5862 nitrogen fixation protein,fixA
msr5868 hypothetical protein mll5864 nitrogenase stabilizer NifW
mlr5875 unknown protein mll5865 nitrogenase cofactor synthesis protein nifS
msr5877 unknown protein mlr5867 ABC transporter, ATP-binding protein exsA
mlr5879 hypothetical protein mlr5869 ferredoxin 2[4Fe-4S] III, fdxB
mlr5880 hypothetical protein mlr5871 nitrogen fixation protein nifQ
mlr5881 hypothetical protein mll5872 RNA POLYMERASE SIGMA-54 FACTOR rpoN
mlr5886 unknown protein mll5873 peroxiredoxin 2 family protein
mlr5887 unknown protein mlr5876 CYTOCHROME P450
mll5889 unknown protein mlr5878 gamma-BHC dehydrochlorinase
mlr5890 hypothetical protein mlr5882 Phosphoenolpyruvate Mutase
mlr5896 transport system permease protein mlr5883 aspartate transaminase
mlr5897 transport system permease protein mlr5884 similar to hemolysin erythrocyte lysis protein 2
msr5902 unknown protein mlr5888 asparagine synthetase
mlr5903 plasmid stabilization protein mlr5905 nitrogenase iron protein, nifH
mll8741 unknown protein mlr5906 nitrogenase molybdenum-iron protein alpha chain, nifD
mlr5912 hypothetical protein mlr5907 nitrogenase molybdenum-iron protein beta chain, nifK
mlr5914 hypothetical protein mlr5908 nitrogenase molybdenum-cofactor synthesis protein nifE
mlr5915 hypothetical protein mlr5909 nitrogenase molybdenum-iron protein beta chain, nifN
msl5919 unknown protein mlr5911 nitrogenase molybdenum-iron protein nifX
msl5920 unknown protein mlr5913 phosphate regulatory protein
mlr5924 unknown protein mll5917 acetoacetate decarboxylase
msr5928 hypothetical protein mll5922 GDP-D-mannose dehydratase(nodulation protein NoeL)
mll5933 unknown protein mlr5923 lysine:N6-hydroxylase
mlr5935 unknown protein mlr5926 similar to tRNA synthetase
mll5936 hypothetical protein mlr5930 ferredoxin 2[4Fe-4S] III, fdxB
mll8751 unknown protein mlr5932 1-aminocyclopropane-1-carboxylate deaminase
msl8680 unknown protein mll5934 transcriptional regulator
mll5942 hypothetical protein mll5941 nitrogen fixation protein nifU
mlr5944 unknown protein mlr5943 L-2,4-diaminobutyric acid transaminase
mlr5945 unknown protein mll5967 transposase
mlr5946 transposase
msr5947 transposase
mll5948 transposase
mll5949 transposase
mll5951 unknown protein
mlr5952 transposase
mll8752 unknown protein
mlr5955 unknown protein
mll5956 integrase/recombinase
mll5957 integrase/recombinase
mll5958 integrase/recombinase
mlr5962 unknown protein
mll5963 hypothetical protein
mll5964 transposase
mlr5965 transposase
msl5966 unknown protein
msl8683 unknown protein
mlr5971 L-lysine 2,3-aminomutase
msr5972 transposase
mlr5973 integrase/recombinase
EI-2 msl6054 unknown protein mlr6063 transposase
mll6055 hypothetical protein
mlr6056 hypothetical protein
msl6057 unknown protein
mll6059 unknown protein
msl6060 unknown protein
msr6061 unknown protein
msr8685 unknown protein
mll6062 hypothetical protein
EI-3 msl6120 unknown protein mlr6101 aminotransferase
msl6121 unknown protein mlr6102 transcriptional regulator
mll8742 unknown protein mlr6103 conjugation factor synthetase, traI
Å@ mlr6114 serine hydroxymethyltransferase
Å@ mlr6115 S-adenosylmethionine synthetase
Å@ mlr6117 carbohydrate kinase
Å@ msr6116 carbohydrate kinase
Å@ mlr6118 cold-shock protein
Å@ mll6119 TRANSCRIPTIONAL REGULATORY PROTEIN
Å@ mll6123 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase
Å@ mll6125 cytochrome P450-family protein
Å@ mll6127 outer membrane protein
Å@ mll6128 transposase
Å@ mlr6129 transcriptional regulator
Å@ mlr6130 L-threonine aldolase
Å@ mlr6131 hypothetical protein
Å@ mlr6132 outer membrane serine protease
EI-4 msl6205 similar to 5-methyltetrahydrofolate-homocysteine S-methyltransferase mll6220 transposase
mll6206 similar to 5-methyltetrahydrofolate-homocysteine S-methyltransferase mll6225 transposase
mll6207 DNA-damage-inducible protein
mlr6209 histidine decarboxylase
mlr6210 glutamine synthetase III
mll6211 alanine racemase
mll6212 hypothetical protein
msl6213 hypothetical protein
mlr6215 unknown protein
mlr6217 hypothetical protein
mlr6218 probable dipeptidase
msr6219 transposase
msl6221 transposase
mll6222 transposase
mll6223 transposase
mll6224 transposase
mlr6226 methyltransferase
EI-5 mll6279 hypothetical protein Å@ Å@
mll6280 hypothetical protein
msr6281 unknown protein
mlr6282 similar to phosphinothricin tripeptide synthetase B
mlr6283 L-proline 3-hydroxylase
mll6284 putative transporter
mlr6294 hypothetical protein
mlr6296 putative carboxylase
mlr6298 gamma-glutamyl kinase
mlr6299 transcription regulator
mlr6301 transposase
EI-6 mll6362 transposase mll6363 resolvase-like
mlr6369 hypothetical protein mlr6364 cytochrome P-450
mlr6370 hypothetical protein mlr6365 cytochrome P-450
mlr6371 hypothetical protein mlr6366 PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE
Å@ mlr6367 cytochrome P450
Å@ mlr6368 geranyltranstransferase
Å@ mlr6372 transport protein
EI-7 msr6406 unknown protein mlr6405 conjugal transfer protein trbI
Å@ mll6408 coproporphyrinogen oxidase III
Å@ mlr6409 transcriptional regulator
Å@ mll6410 hypothetical protein
Å@ mlr6411 cytochrome-c oxidase fixN chain
Å@ mlr6412 cytochrome-c oxidase fixO chain
Å@ msr6413 cytochrome-c oxidase fixQ chain
Å@ mlr6414 cytochrome-c oxidase fixP chain
Å@ mlr6415 nitrogen fixation protein fixG
Å@ mlr6416 nitrogen fixation protein fixH